biomed_roberta_base

Maintained By
allenai

BioMed-RoBERTa-base

PropertyValue
AuthorAllenAI
Training Data2.68M scientific papers (7.55B tokens)
Base ArchitectureRoBERTa-base
Downloads50,838

What is biomed_roberta_base?

BioMed-RoBERTa-base is a specialized language model adapted from RoBERTa-base specifically for biomedical domain applications. This model represents a significant advancement in biomedical NLP, having been trained on an extensive corpus of 2.68 million scientific papers from the Semantic Scholar database, encompassing 7.55B tokens and 47GB of data.

Implementation Details

The model utilizes continued pretraining methodology on RoBERTa-base architecture, focusing on full-text scientific papers rather than just abstracts. This comprehensive approach ensures deeper domain adaptation and better understanding of biomedical context.

  • Based on RoBERTa-base architecture
  • Trained on full-text scientific papers, not just abstracts
  • Implements transformer-based architecture with domain-specific adaptations
  • Available in PyTorch and JAX frameworks

Core Capabilities

  • Text Classification (RCT-180K: 86.9% accuracy)
  • Relation Extraction (ChemProt: 83.0% accuracy)
  • Named Entity Recognition (BC5CDR: 87.8% accuracy)
  • Biomedical text understanding and analysis

Frequently Asked Questions

Q: What makes this model unique?

This model stands out due to its extensive training on full-text biomedical papers rather than just abstracts, making it particularly effective for biomedical NLP tasks. It consistently outperforms the base RoBERTa model across various biomedical benchmarks.

Q: What are the recommended use cases?

The model is ideal for biomedical text analysis tasks including named entity recognition, relation extraction, and text classification in medical and scientific contexts. It shows particular strength in tasks like chemical compound identification and disease entity recognition.

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